STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_2696KEGG: gbe:GbCGDNIH1_0661 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family. (247 aa)    
Predicted Functional Partners:
Hden_2695
KEGG: bid:Bind_3511 precorrin-3B C17-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
 0.998
Hden_2698
KEGG: bid:Bind_3508 precorrin-3B synthase; TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
 
 
 0.994
Hden_2697
KEGG: mno:Mnod_2151 precorrin-8X methylmutase CbiC/CobH; PFAM: Precorrin-8X methylmutase CbiC/CobH.
 
  
 0.989
Hden_2693
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: met:M446_2444 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
  
 0.964
Hden_2691
TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: bbt:BBta_3152 precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.962
Hden_2699
TIGRFAM: cobaltochelatase, CobN subunit; KEGG: rpc:RPC_1889 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase.
 
  
 0.961
Hden_2705
KEGG: met:M446_3750 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; cob(II)yrinic acid a,c-diamide reductase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; nitroreductase.
 
 
 0.960
Hden_2258
TIGRFAM: siroheme synthase; KEGG: azc:AZC_0234 uroporphyrin-III C-methyltransferase.
  
 
 0.951
Hden_2694
TIGRFAM: precorrin-6x reductase; KEGG: rpc:RPC_1885 cobalt-precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.
 
  
 0.949
Hden_2700
TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bra:BRADO4908 putative cobalamin synthesis protein CobW; SMART: cobalamin synthesis CobW domain protein.
 
   
 0.864
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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