Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hden_3003Hypothetical protein. (81 aa)    
Predicted Functional Partners:
Hden_2998
KEGG: kfl:Kfla_3820 hypothetical protein.
       0.773
Hden_2999
Putative transcriptional regulator; KEGG: afw:Anae109_0602 regulatory protein ArsR.
       0.773
Hden_3000
KEGG: xcb:XC_2014 hypothetical protein.
       0.773
Hden_3001
KEGG: xau:Xaut_3623 hypothetical protein.
       0.773
Hden_3002
Hypothetical protein; KEGG: htu:Htur_3193 RecA-superfamily ATPase implicated in signal transduction-like protein.
       0.773
Hden_3004
KEGG: bta:785824 hypothetical protein LOC785824.
       0.773
Hden_3005
KEGG: sbi:SORBI_02g043560 hypothetical protein.
       0.723
Hden_3006
Hypothetical protein.
       0.723
Hden_3007
KEGG: FHA domain-containing protein.
       0.723
Hden_3008
PFAM: Protein of unknown function DUF2312; KEGG: pzu:PHZ_c3117 hypothetical protein.
       0.582
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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