STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_3126KEGG: nha:Nham_1427 hypothetical protein. (483 aa)    
Predicted Functional Partners:
Hden_1121
PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: pla:Plav_0917 hypothetical protein.
 
 
   0.840
Hden_1120
PFAM: conserved hypothetical protein; KEGG: rpa:RPA1903 hypothetical protein.
 
 
   0.839
Hden_1116
KEGG: pla:Plav_0911 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
 
 
   0.834
Hden_1123
KEGG: pla:Plav_0919 gene transfer agent (GTA) like protein.
 
 
   0.834
Hden_1119
KEGG: xau:Xaut_3164 gene transfer agent (GTA) orfg11.
 
  
 0.815
Hden_1106
KEGG: pla:Plav_0903 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
   0.806
Hden_1112
KEGG: pla:Plav_0908 phiE125 gp8 hypothetical protein.
 
 
   0.803
Hden_1122
KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein.
 
  
 0.800
Hden_1111
KEGG: pla:Plav_0906 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
 
 
 
 0.789
Hden_1117
KEGG: pla:Plav_0913 hypothetical protein.
 
     0.774
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.