STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_3203KEGG: rlt:Rleg2_0703 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein. (456 aa)    
Predicted Functional Partners:
Hden_3204
Two component transcriptional regulator, winged helix family; KEGG: mlo:mlr4457 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 0.965
Hden_1365
GAF sensor hybrid histidine kinase; KEGG: bja:bll2599 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver.
  
 
 0.931
Hden_1134
KEGG: rpd:RPD_2012 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 0.847
Hden_0349
Two component transcriptional regulator, winged helix family; KEGG: rle:RL1157 putative two-component response regulator transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 0.846
Hden_3434
KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein.
 
 
 
0.771
Hden_0295
Two component transcriptional regulator PhoB, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_0202 two component transcriptional regulator; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 0.768
Hden_0594
Two component transcriptional regulator, winged helix family; KEGG: acr:Acry_0577 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
 
 
 0.731
Hden_2498
Two component transcriptional regulator, winged helix family; KEGG: mes:Meso_2142 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 
 0.721
Hden_2821
Two component transcriptional regulator, winged helix family; KEGG: sal:Sala_0801 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
 
 0.708
Hden_1126
Two component transcriptional regulator, winged helix family; KEGG: mes:Meso_0894 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
 
 0.693
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.