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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_3206KEGG: oca:OCAR_7084 hypothetical protein. (654 aa)    
Predicted Functional Partners:
Hden_3104
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
    
   0.658
rnhB-2
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.618
Hden_2206
TIGRFAM: TonB family protein; KEGG: rce:RC1_1801 protein TonB, putative.
  
     0.602
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.582
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.579
Hden_2230
KEGG: dsa:Desal_2391 hypothetical protein.
  
     0.569
Hden_0310
PFAM: membrane-bound metal-dependent hydrolase; KEGG: alv:Alvin_0692 membrane-bound metal-dependent hydrolase.
 
     0.550
Hden_2638
PFAM: protein of unknown function DUF882; KEGG: mlo:mll2999 hypothetical protein.
  
     0.540
Hden_0734
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; KEGG: pmy:Pmen_2542 oxidoreductase FAD/NAD(P)-binding subunit.
  
  
 0.537
Hden_0527
PFAM: Soluble ligand binding domain; KEGG: nhl:Nhal_2430 respiratory-chain NADH dehydrogenase domain 51 kDa subunit.
  
  
 0.504
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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