STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_3206KEGG: oca:OCAR_7084 hypothetical protein. (654 aa)    
Predicted Functional Partners:
rnhB-2
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.618
Hden_2206
TIGRFAM: TonB family protein; KEGG: rce:RC1_1801 protein TonB, putative.
  
     0.602
Hden_2230
KEGG: dsa:Desal_2391 hypothetical protein.
  
     0.569
Hden_0310
PFAM: membrane-bound metal-dependent hydrolase; KEGG: alv:Alvin_0692 membrane-bound metal-dependent hydrolase.
 
     0.545
Hden_2638
PFAM: protein of unknown function DUF882; KEGG: mlo:mll2999 hypothetical protein.
  
     0.540
Hden_0076
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.537
Hden_3159
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.537
Hden_3104
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
    
   0.511
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.501
Hden_2150
Hypothetical protein; KEGG: msl:Msil_0915 putative general secretion pathway protein J.
 
   
 0.474
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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