Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mmol_0484KEGG: ecr:ECIAI1_4519 conserved hypothetical protein, putative P-loop containing nucleoside triphosphate hydrolases. (374 aa)    
Predicted Functional Partners:
Mmol_0483
PFAM: protein of unknown function DUF262; KEGG: ecr:ECIAI1_4520 hypothetical protein.
 
     0.943
Mmol_0482
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: vco:VC0395_1029 putative site-specific DNA-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.775
Mmol_0485
KEGG: vch:VCA0201 hypothetical protein.
       0.736
Mmol_1837
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: psp:PSPPH_4979 prophage PSPPH06, putative reverse transcriptase/maturase.
 
    0.460
Your Current Organism:
Methylotenera mobilis JLW8
NCBI taxonomy Id: 583345
Other names: M. mobilis JLW8, Methylotenera mobilis str. JLW8, Methylotenera mobilis strain JLW8
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