Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mmol_2016KEGG: vcj:VCD_002558 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Mmol_2015
PFAM: flagellar basal body rod protein; KEGG: aav:Aave_4742 flagellar basal body rod protein.
       0.541
rlmF
rRNA (adenine-N(6)-)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.525
Mmol_2014
KEGG: dar:Daro_4138 hypothetical protein.
       0.469
Mmol_1000
PFAM: protein of unknown function DUF45; KEGG: pen:PSEEN5016 hypothetical protein.
  
     0.431
Mmol_0132
KEGG: tcx:Tcr_1006 hypothetical protein.
  
     0.430
Your Current Organism:
Methylotenera mobilis JLW8
NCBI taxonomy Id: 583345
Other names: M. mobilis JLW8, Methylotenera mobilis str. JLW8, Methylotenera mobilis strain JLW8
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