Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mmol_2249KEGG: mfa:Mfla_2487 hypothetical protein. (237 aa)    
Predicted Functional Partners:
Mmol_2026
KEGG: mfa:Mfla_2287 hypothetical protein.
  
     0.719
Mmol_0976
KEGG: mfa:Mfla_1701 hypothetical protein.
  
     0.688
Mmol_2021
KEGG: mfa:Mfla_2282 putative lipoprotein-like protein.
  
     0.627
Mmol_0659
KEGG: mfa:Mfla_2079 hypothetical protein.
  
     0.619
Mmol_0888
KEGG: tbd:Tbd_0552 hypothetical protein.
  
     0.614
Mmol_1949
PFAM: NolW domain protein; KEGG: mfa:Mfla_0983 NolW-like protein.
  
     0.605
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.604
Mmol_2139
KEGG: mfa:Mfla_2448 hypothetical protein.
  
     0.603
Mmol_0249
KEGG: mfa:Mfla_0083 hypothetical protein.
  
     0.591
Mmol_2148
PFAM: Pilus assembly protein PilP; KEGG: mfa:Mfla_2458 type IV pilus assembly protein PilP.
  
     0.564
Your Current Organism:
Methylotenera mobilis JLW8
NCBI taxonomy Id: 583345
Other names: M. mobilis JLW8, Methylotenera mobilis str. JLW8, Methylotenera mobilis strain JLW8
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