STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0067PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce4705 molybdopterin oxidoreductase, iron-sulfur binding subunit. (309 aa)    
Predicted Functional Partners:
Caka_0068
PFAM: Polysulphide reductase NrfD; KEGG: scl:sce4706 molybdopterin oxidoreductase, membrane subunit.
 
 
 0.965
napA
Molybdopterin oxidoreductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.957
Caka_0019
PFAM: Polysulphide reductase NrfD; KEGG: ote:Oter_3933 polysulphide reductase NrfD.
 
 
 0.821
Caka_0017
KEGG: ote:Oter_3935 cytochrome c family protein.
 
 
 
 0.792
Caka_0066
KEGG: scl:sce4704 hypothetical protein.
       0.783
Caka_0348
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: scl:sce8491 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.705
Caka_0889
KEGG: mxa:MXAN_4341 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.687
Caka_0063
KEGG: scl:sce4701 diheme cytochrome c precursor.
  
  
 0.680
Caka_0022
KEGG: ote:Oter_3930 hypothetical protein.
 
 
 0.657
Caka_0069
KEGG: dfe:Dfer_2184 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
  
  
 0.587
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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