STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0178KEGG: hypothetical protein. (258 aa)    
Predicted Functional Partners:
Caka_0177
Putative CheW protein; KEGG: eat:EAT1b_0471 response regulator receiver modulated CheW protein.
       0.773
Caka_0179
KEGG: cts:Ctha_2355 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; CheW domain protein.
       0.737
Caka_0176
PFAM: NmrA family protein; KEGG: bha:BH1520 hypothetical protein.
       0.682
Caka_0180
KEGG: cts:Ctha_2353 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
       0.550
Caka_0181
CheW protein; KEGG: sml:Smlt2256 putative purine binding chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein.
       0.520
Caka_0182
KEGG: pfl:PFL_5826 type IV pilus response regulator PilH; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.520
Caka_0183
KEGG: scl:sce8268 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.492
Caka_0174
Hypothetical protein; KEGG: ank:AnaeK_2647 putative CheA signal transduction histidine kinase.
       0.401
Caka_0175
KEGG: fjo:Fjoh_4767 LysR family transcriptional regulator.
       0.401
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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