STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0226PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2552 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  0.950
kduI-2
4-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  0.950
Caka_2861
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4291 short-chain dehydrogenase/reductase SDR.
  
  
 
0.919
Caka_0519
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4331 short-chain dehydrogenase/reductase SDR.
  
  
 
0.917
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
 
  0.910
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
 
  0.910
Caka_0517
PFAM: SAF domain protein; KEGG: altronate dehydratase.
     
  0.900
Caka_0518
KEGG: nar:Saro_2430 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein.
     
  0.900
Caka_2981
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: ote:Oter_4198 RpiB/LacA/LacB family sugar- phosphate isomerase; PFAM: Ribose/galactose isomerase.
  
 
 0.830
Caka_0109
PFAM: PfkB domain protein; KEGG: tro:trd_A0853 2-keto-3-deoxygluconate kinase.
   
  0.813
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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