STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0283KEGG: seu:SEQ_2088 phage protein. (88 aa)    
Predicted Functional Partners:
Caka_0282
PFAM: protein of unknown function UPF0157; KEGG: sbl:Sbal_3138 hypothetical protein.
  
    0.598
Caka_0284
Hypothetical protein; KEGG: rba:RB9518 signal peptide.
       0.542
Caka_1645
RNA-binding S4 domain protein; KEGG: pdi:BDI_0331 putative heat shock protein 15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
  
    0.437
Caka_0285
KEGG: hypothetical protein.
       0.432
Caka_0281
Hypothetical protein; KEGG: rru:Rru_A3503 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.425
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.