STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0354PFAM: cobalamin synthesis protein P47K; KEGG: hor:Hore_15320 cobalamin synthesis protein P47K. (305 aa)    
Predicted Functional Partners:
Caka_0355
PFAM: Protein of unknown function DUF1638; KEGG: ote:Oter_3656 hypothetical protein.
 
     0.835
Caka_0356
Ferredoxin; KEGG: drm:Dred_2206 ferredoxin.
 
     0.819
Caka_0353
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dat:HRM2_47380 UroD; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.794
Caka_0351
Uroporphyrinogen-III decarboxylase-like protein; KEGG: dsy:DSY4756 hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.645
Caka_0352
PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: ote:Oter_3658 cobalamin B12-binding domain- containing protein.
 
  
 0.642
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.537
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.446
Caka_0911
KEGG: ote:Oter_2692 TraR/DksA family transcriptional regulator.
  
  
 0.445
rpmB
KEGG: ote:Oter_3785 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.443
Caka_2182
PFAM: periplasmic solute binding protein; KEGG: mca:MCA2174 adhesion lipoprotein.
  
  
 0.428
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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