STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0394PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000844 putative fusion protein: glycosyltransferase and acetyltransferase. (212 aa)    
Predicted Functional Partners:
Caka_0393
PFAM: glycosyl transferase group 1; KEGG: mag:amb1438 glycosyltransferase.
 
    0.807
Caka_0396
PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1377 glycosyl transferase family protein.
 
     0.807
Caka_0392
KEGG: dal:Dalk_1324 hypothetical protein.
  
  
 0.795
Caka_1987
KEGG: pph:Ppha_0561 putative acetyltransferase.
  
     0.774
Caka_0395
KEGG: mpt:Mpe_A2726 hypothetical protein.
       0.773
Caka_0399
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3925 glycosyl transferase family protein.
  
    0.752
Caka_0397
KEGG: gem:GM21_1653 hemolytic protein HlpA-like protein.
       0.747
Caka_0398
PFAM: sulfotransferase; KEGG: rde:RD1_B0010 sulfotransferase, putative.
       0.747
Caka_0391
Capsular exopolysaccharide family; KEGG: ote:Oter_3243 exopolysaccharide tyrosine- protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.725
Caka_1986
Acetyltransferase; KEGG: bvu:BVU_2656 acetyltransferase.
  
     0.712
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.