STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0395KEGG: mpt:Mpe_A2726 hypothetical protein. (434 aa)    
Predicted Functional Partners:
Caka_0392
KEGG: dal:Dalk_1324 hypothetical protein.
       0.777
Caka_0396
PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1377 glycosyl transferase family protein.
       0.776
Caka_0393
PFAM: glycosyl transferase group 1; KEGG: mag:amb1438 glycosyltransferase.
       0.773
Caka_0394
PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000844 putative fusion protein: glycosyltransferase and acetyltransferase.
       0.773
Caka_0397
KEGG: gem:GM21_1653 hemolytic protein HlpA-like protein.
       0.750
Caka_0398
PFAM: sulfotransferase; KEGG: rde:RD1_B0010 sulfotransferase, putative.
       0.746
Caka_0399
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3925 glycosyl transferase family protein.
       0.746
Caka_0391
Capsular exopolysaccharide family; KEGG: ote:Oter_3243 exopolysaccharide tyrosine- protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.603
Caka_0400
TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: cag:Cagg_2148 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase.
       0.595
Caka_0401
KEGG: mar:MAE_10890 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
       0.595
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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