STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0416PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ote:Oter_0501 peptidase A24A domain- containing protein. (311 aa)    
Predicted Functional Partners:
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.863
Caka_1589
PFAM: Type II secretion system F domain; KEGG: ote:Oter_0681 type II secretion system protein.
 
  
 0.842
Caka_1446
PFAM: Type II secretion system F domain; KEGG: amu:Amuc_1584 type II secretion system protein.
 
  
 0.832
Caka_2414
PFAM: Type II secretion system F domain; KEGG: ote:Oter_1619 type II secretion system protein.
 
  
 0.818
Caka_1448
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ote:Oter_3084 twitching motility protein; SMART: AAA ATPase.
 
   
 0.787
Caka_1312
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ote:Oter_3833 type II secretion system protein E.
 
 
 0.781
Caka_1434
KEGG: ote:Oter_3192 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E.
 
   
 0.781
Caka_3034
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: hor:Hore_05980 Tfp pilus assembly protein, pilus retraction ATPase PilT; SMART: AAA ATPase.
 
   
 0.774
Caka_1449
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ote:Oter_3083 type II secretion system protein E.
 
 
 0.754
Caka_0854
KEGG: ote:Oter_3859 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
 
 0.746
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.