STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0444PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: vap:Vapar_5455 mandelate racemase/muconate lactonizing protein. (369 aa)    
Predicted Functional Partners:
Caka_0054
Beta-agarase; KEGG: sde:Sde_1175 agarase; PFAM: glycoside hydrolase family 16.
  
     0.712
Caka_0372
KEGG: sde:Sde_2657 hypothetical protein.
  
     0.694
Caka_0995
Beta-agarase; KEGG: sde:Sde_2650 agarase.
  
     0.674
Caka_0493
Beta-agarase; PFAM: Ig domain protein group 2 domain protein; KEGG: pat:Patl_2341 agarase; SMART: Ig domain protein group 2 domain protein.
  
     0.651
Caka_0895
PFAM: Ig family protein; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.
  
     0.632
Caka_0071
PFAM: glycoside hydrolase family 16; KEGG: gfo:GFO_1714 glycosyl hydrolase.
  
     0.617
Caka_0490
PFAM: glycoside hydrolase family 16; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.
  
     0.614
Caka_1253
Beta-agarase; PFAM: Carbohydrate binding family 6; KEGG: pat:Patl_0839 Ig-like, group 2; SMART: cellulose binding type IV.
  
     0.608
Caka_0135
Carbohydrate binding family 6; KEGG: pat:Patl_0839 Ig-like, group 2; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.
  
     0.593
Caka_0445
PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_2553 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.555
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.