STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0446KEGG: fjo:Fjoh_4187 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Caka_0898
PFAM: glycosyl hydrolase family 88; KEGG: bth:BT_2963 hypothetical protein.
 
     0.974
Caka_0449
PFAM: glycosyl hydrolase family 88; KEGG: phe:Phep_2294 glycosyl hydrolase family 88.
 
     0.960
Caka_0811
PFAM: glycosyl hydrolase family 88; KEGG: vfi:VF_A0996 hypothetical protein.
 
     0.759
Caka_0447
Hypothetical protein.
       0.544
Caka_2927
PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_7254 protein of unknown function DUF1080.
  
     0.534
Caka_1006
Sialate O-acetylesterase; KEGG: bvu:BVU_2697 putative sialic acid-specific acetylesterase II; PFAM: protein of unknown function DUF303 acetylesterase putative.
 
     0.532
Caka_2826
KEGG: rba:RB3042 hypothetical protein.
  
     0.530
Caka_3123
PFAM: protein of unknown function DUF1080; KEGG: sde:Sde_3043 hypothetical protein.
  
     0.518
Caka_0199
PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_0811 hypothetical protein.
  
     0.500
Caka_3060
KEGG: sde:Sde_3862 hypothetical protein.
 
     0.468
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.