STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0480KEGG: aau:AAur_0604 hypothetical protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase). (342 aa)    
Predicted Functional Partners:
Caka_0974
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: ate:Athe_2072 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
  
     0.773
Caka_0558
Alpha-L-fucosidase; KEGG: dfe:Dfer_1256 hypothetical protein; PFAM: glycoside hydrolase family 65 central catalytic.
  
    0.746
Caka_2219
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: hau:Haur_1177 glycoside hydrolase family protein.
 
  
 0.517
Caka_0481
PFAM: MaoC domain protein dehydratase; KEGG: mlo:mll7159 MaoC protein.
       0.466
Caka_0479
Coagulation factor 5/8 type domain protein; KEGG: dfe:Dfer_2605 putative pyridine nucleotide- disulphide oxidoreductase; PFAM: coagulation factor 5/8 type domain protein; glucose-inhibited division protein A; Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein.
       0.444
Caka_0458
PFAM: glycoside hydrolase family 28; KEGG: phe:Phep_1710 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
  
     0.423
Caka_0755
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xac:XAC1308 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.409
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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