STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0590KEGG: dat:HRM2_29480 hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat. (853 aa)    
Predicted Functional Partners:
Caka_0591
KEGG: fjo:Fjoh_0720 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
     0.938
Caka_0592
TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: rba:RB8763 BatA; SMART: von Willebrand factor type A.
 
     0.898
Caka_0594
PFAM: protein of unknown function DUF58; KEGG: hau:Haur_4903 hypothetical protein.
 
    0.885
Caka_0593
Hypothetical protein; KEGG: cyn:Cyan7425_5091 MscS mechanosensitive ion channel.
       0.777
Caka_0102
KEGG: mac:MA4292 cell surface protein.
  
 
   0.696
Caka_1696
KEGG: bxe:Bxe_A2137 putative transmembrane protein.
 
     0.630
Caka_0958
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rop:ROP_44670 hypothetical protein.
  
     0.595
Caka_0595
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: rmr:Rmar_2551 ATPase associated with various cellular activities AAA_3.
       0.590
Caka_1692
KEGG: cps:CPS_2993 hypothetical protein.
  
     0.586
Caka_0617
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB4241 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.570
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.