STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0617RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB4241 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (178 aa)    
Predicted Functional Partners:
Caka_0613
PFAM: coagulation factor 5/8 type domain protein; KEGG: dfe:Dfer_1976 planctomycete cytochrome c.
 
    0.830
Caka_0615
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: rba:RB8437 cis/trans isomerase.
 
     0.821
Caka_0616
PFAM: coagulation factor 5/8 type domain protein; KEGG: rba:RB9563 hypothetical protein.
  
 
 0.786
Caka_0614
PFAM: protein of unknown function DUF1501; KEGG: rba:RB8440 hypothetical protein.
 
     0.776
Caka_1895
Hypothetical protein; KEGG: rba:RB9945 signal peptide.
  
     0.752
Caka_0151
PFAM: protein of unknown function DUF1549; KEGG: rba:RB6796 hypothetical protein.
  
     0.750
Caka_0975
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB11473 hypothetical protein; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
     0.740
Caka_0706
KEGG: rba:RB5811 hypothetical protein.
  
     0.712
Caka_0947
KEGG: dal:Dalk_3089 hypothetical protein.
  
    0.697
Caka_0043
PFAM: protein of unknown function DUF214; KEGG: rba:RB4314 hypothetical protein.
  
     0.689
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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