STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0619Oxidoreductase (related to aryl-alcohol dehydrogenase)-like protein; KEGG: cth:Cthe_0236 aldo/keto reductase. (392 aa)    
Predicted Functional Partners:
Caka_0620
KEGG: pap:PSPA7_4253 hypothetical protein; Belongs to the CvfB family.
       0.661
Caka_0079
KEGG: ftf:FTF0505 hypothetical protein.
  
     0.643
Caka_0621
PFAM: Protein of unknown function DUF2132; KEGG: abo:ABO_2416 hypothetical protein.
       0.474
Caka_2924
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ami:Amir_3837 xylose isomerase domain protein TIM barrel.
 
     0.410
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.