STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0652PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: ote:Oter_2068 membrane protein-like protein. (269 aa)    
Predicted Functional Partners:
Caka_0656
KEGG: ote:Oter_2072 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II.
 
  
 0.931
Caka_0655
KEGG: ote:Oter_2071 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.888
Caka_0654
PFAM: cytochrome c oxidase subunit III; KEGG: ote:Oter_2070 cytochrome c oxidase subunit III.
 
  
 0.885
Caka_0653
KEGG: ote:Oter_2069 hypothetical protein.
  
  
 0.701
Caka_0651
PFAM: TrkA-C domain protein; Citrate transporter; KEGG: ote:Oter_2066 TrkA domain-containing protein.
       0.658
Caka_1248
PFAM: electron transport protein SCO1/SenC; KEGG: ote:Oter_2077 electron transport protein SCO1/SenC.
 
   
 0.622
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
   
 0.610
Caka_0659
PFAM: cytochrome oxidase assembly; KEGG: ote:Oter_2076 cytochrome oxidase assembly.
 
   
 0.597
Caka_0657
PFAM: protein of unknown function DUF420; KEGG: ote:Oter_2074 hypothetical protein.
       0.490
Caka_1129
PFAM: Exosortase EpsH-related; KEGG: ote:Oter_2528 hypothetical protein.
  
     0.478
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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