STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0781KEGG: dps:DP0640 hypothetical protein. (603 aa)    
Predicted Functional Partners:
Caka_0777
PFAM: protein of unknown function DUF58; KEGG: dps:DP0636 hypothetical protein.
 
    0.949
Caka_0779
TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: dps:DP0638 hypothetical protein; SMART: von Willebrand factor type A.
 
     0.946
Caka_0780
Von Willebrand factor type A; KEGG: dat:HRM2_29490 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
     0.945
Caka_0782
KEGG: sru:SRU_2565 BatD protein, putative.
 
    0.928
Caka_0594
PFAM: protein of unknown function DUF58; KEGG: hau:Haur_4903 hypothetical protein.
 
    0.779
Caka_0778
KEGG: fsu:Fisuc_1435 hypothetical protein.
       0.773
Caka_0592
TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: rba:RB8763 BatA; SMART: von Willebrand factor type A.
 
     0.752
Caka_0591
KEGG: fjo:Fjoh_0720 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
     0.745
Caka_0776
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cts:Ctha_0694 ATPase associated with various cellular activities AAA_3.
 
     0.697
Caka_1697
PFAM: protein of unknown function DUF58; KEGG: cps:CPS_2989 hypothetical protein.
 
    0.541
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.