STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0794KEGG: chl:Chy400_2704 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein. (322 aa)    
Predicted Functional Partners:
Caka_0802
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.
  
 0.997
Caka_0801
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: rrs:RoseRS_0544 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
  
 0.971
Caka_0800
KEGG: ote:Oter_3306 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 0.950
Caka_0795
TIGRFAM: succinate CoA transferase; KEGG: ote:Oter_4108 succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.
  
  
 0.667
Caka_0796
TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: ote:Oter_3314 sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit.
       0.528
Caka_0799
PFAM: carboxyl transferase; KEGG: ote:Oter_3307 propionyl-CoA carboxylase.
 
   
 0.469
Caka_0793
PFAM: sulfatase; KEGG: rba:RB198 N-acetylgalactosamine-4-sulfatase precursor.
       0.441
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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