STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0808Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (346 aa)    
Predicted Functional Partners:
Caka_0701
Galactokinase; KEGG: ote:Oter_0502 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; Belongs to the GHMP kinase family. GalK subfamily.
 0.981
Caka_0755
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xac:XAC1308 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.918
Caka_1849
KEGG: ote:Oter_3289 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.917
Caka_0227
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: gfo:GFO_1719 glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.915
Caka_0198
KEGG: pat:Patl_0885 hypothetical protein.
  
 
 0.911
Caka_1721
PFAM: ROK family protein; KEGG: cpi:Cpin_6562 ROK family protein.
    
 0.907
Caka_0368
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: gfo:GFO_1719 glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.904
Caka_0609
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: gfo:GFO_1719 glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.904
Caka_0809
KEGG: ppd:Ppro_0384 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.553
Caka_2205
PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain protein; biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; KEGG: pay:PAU_02673 similar to 3-methyl-2- oxobutanoate dehydrogenase.
  
  
 0.495
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.