STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0907Chromosome segregation ATPase-like protein; KEGG: ote:Oter_0095 hypothetical protein. (530 aa)    
Predicted Functional Partners:
Caka_0906
KEGG: ote:Oter_0096 hypothetical protein.
       0.801
Caka_1943
PFAM: NUDIX hydrolase; KEGG: ote:Oter_2848 NUDIX hydrolase.
 
     0.776
Caka_0933
PFAM: Organic solvent tolerance protein; KEGG: ote:Oter_3845 organic solvent tolerance protein.
  
     0.764
Caka_1097
KEGG: ote:Oter_2563 hypothetical protein.
  
   0.761
Caka_2318
KEGG: ote:Oter_0090 hypothetical protein.
  
     0.759
greA
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
   
 0.759
Caka_2309
KEGG: ote:Oter_1404 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
     0.752
Caka_3025
PFAM: Peptidase M23; KEGG: ote:Oter_2787 peptidase M23.
 
     0.723
Caka_0250
PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ote:Oter_0279 exonuclease RNase T and DNA polymerase III.
  
   0.707
Caka_2466
KEGG: ote:Oter_2843 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
  
 0.706
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.