STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0939Hypothetical protein; KEGG: sus:Acid_2266 peptidase domain-containing protein. (726 aa)    
Predicted Functional Partners:
Caka_0940
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_2265 hypothetical protein.
 
     0.945
Caka_0941
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_2264 hypothetical protein.
 
     0.934
Caka_0938
PFAM: Endoribonuclease L-PSP; KEGG: acr:Acry_3477 endoribonuclease L-PSP.
       0.773
Caka_1895
Hypothetical protein; KEGG: rba:RB9945 signal peptide.
  
     0.758
Caka_0151
PFAM: protein of unknown function DUF1549; KEGG: rba:RB6796 hypothetical protein.
  
     0.750
Caka_1561
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
  
     0.744
Caka_1560
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1587; Protein of unknown function DUF1595; Protein of unknown function DUF1588; protein of unknown function DUF1585; KEGG: rba:RB7033 filamin.
  
     0.734
Caka_0150
PFAM: protein of unknown function DUF1501; KEGG: rba:RB6795 hypothetical protein.
 
     0.723
Caka_0544
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB1210 hexulose-6-phosphate isomerase.
  
     0.706
Caka_0547
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.701
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.