STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0951KEGG: ote:Oter_0156 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (800 aa)    
Predicted Functional Partners:
Caka_0471
KEGG: lch:Lcho_3204 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.824
Caka_0964
Transcriptional regulator, IclR family; KEGG: pdi:BDI_0622 transcriptional regulator; PFAM: Transcriptional regulator IclR; helix-turn- helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.812
Caka_0549
KEGG: mta:Moth_2113 two component AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
   0.783
Caka_0812
KEGG: pjd:Pjdr2_1341 two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
   0.783
Caka_3115
KEGG: transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
   0.783
Caka_0482
KEGG: pjd:Pjdr2_1910 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
   0.780
Caka_2862
KEGG: pjd:Pjdr2_1427 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
   0.775
Caka_0636
Transcriptional regulator, AraC family; KEGG: rba:RB9879 transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; SMART: Helix-turn-helix, AraC domain.
  
     0.771
Caka_1460
KEGG: ote:Oter_4074 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; Transcriptional regulator, histidine kinase sensor-like; SMART: Helix-turn-helix, AraC domain.
  
 
 0.771
Caka_0552
KEGG: efa:EF1591 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.764
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.