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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1237LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (236 aa)    
Predicted Functional Partners:
Caka_1238
KEGG: tko:TK0332 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2.
 
 0.999
Caka_1239
KEGG: cag:Cagg_1957 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
 
 0.999
Caka_2069
TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl- phosphate synthase L chain ATP-binding; Carbamoyl- phosphate synthetase large chain domain protein; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; KEGG: mei:Msip34_0953 UreA carboxylase; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
  
 0.956
Caka_2072
TIGRFAM: glutamine synthetase, type III; KEGG: mei:Msip34_0949 glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region.
   
 
  0.803
Caka_2744
KEGG: met:M446_4572 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
   
 
  0.803
Caka_1527
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: scl:sce6195 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
  0.800
Caka_1869
KEGG: cts:Ctha_2166 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
  0.800
Caka_1870
KEGG: cyc:PCC7424_3656 glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
  0.800
glsA
Glutaminase; KEGG: sus:Acid_0446 glutaminase; PFAM: Glutaminase, core; Belongs to the glutaminase family.
     
  0.800
Caka_1240
Response regulator receiver protein; KEGG: maq:Maqu_2826 two component, sigma54 specific, fis family transcriptional regulator.
       0.762
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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