STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1247KEGG: ote:Oter_2078 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Caka_1248
PFAM: electron transport protein SCO1/SenC; KEGG: ote:Oter_2077 electron transport protein SCO1/SenC.
       0.776
Caka_1246
PFAM: Superoxide dismutase Ni-type; KEGG: dps:DP2504 hypothetical protein.
       0.592
Caka_1129
PFAM: Exosortase EpsH-related; KEGG: ote:Oter_2528 hypothetical protein.
  
     0.548
Caka_2351
PFAM: O-antigen polymerase; KEGG: ote:Oter_3440 O-antigen polymerase.
  
     0.485
Caka_0155
KEGG: ote:Oter_3804 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.469
Caka_1249
PFAM: protein of unknown function DUF1555; KEGG: sit:TM1040_3767 hemolysin-type calcium- binding region.
       0.459
Caka_1244
PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: hau:Haur_4524 glycosyl transferase family protein.
 
     0.442
Caka_2402
PFAM: Methyltransferase type 11; acyl transferase; KEGG: vfm:VFMJ11_A1040 acyl transferase.
 
    0.438
Caka_1432
KEGG: gau:GAU_3691 hypothetical protein.
  
     0.407
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.