STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1266KEGG: ote:Oter_3781 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (851 aa)    
Predicted Functional Partners:
Caka_1265
KEGG: rba:RB6596 hypothetical protein.
 
     0.826
Caka_1188
TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: sat:SYN_02852 ATP-dependent helicase; SMART: DEAD-like helicase; helicase domain protein.
  
     0.650
Caka_1267
KEGG: ctt:CtCNB1_1098 hypothetical protein.
       0.620
Caka_1268
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ypb:YPTS_3087 hypothetical protein.
       0.620
Caka_0944
KEGG: ote:Oter_3359 helicase; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase.
  
     0.516
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.437
Caka_1270
KEGG: hau:Haur_1830 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.436
Caka_2216
PFAM: DoxX family protein; KEGG: dat:HRM2_27120 MauE.
  
     0.408
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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