STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1492PFAM: NUDIX hydrolase; KEGG: cte:CT0729 NUDIX/MutT family protein. (126 aa)    
Predicted Functional Partners:
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
  
 0.901
Caka_1495
PFAM: CHAD domain containing protein; KEGG: ttu:TERTU_3714 putative CHAD domain containing protein.
 
     0.860
Caka_1494
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dps:DP1251 chromosome partitioning protein Soj.
 
     0.805
Caka_1493
PFAM: adenylate cyclase; KEGG: neu:NE1496 hypothetical protein.
       0.773
Caka_1496
KEGG: ssp:SSPP123 hypothetical protein.
       0.773
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
 
 0.669
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
    0.648
Caka_2044
KEGG: rce:RC1_0943 the GLUG motif domain protein, putative; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein.
  
     0.510
Caka_2045
Hypothetical protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region.
  
     0.505
Caka_1497
KEGG: ote:Oter_3800 hypothetical protein.
       0.488
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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