STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1494PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dps:DP1251 chromosome partitioning protein Soj. (246 aa)    
Predicted Functional Partners:
Caka_1495
PFAM: CHAD domain containing protein; KEGG: ttu:TERTU_3714 putative CHAD domain containing protein.
 
     0.919
Caka_2467
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ote:Oter_2844 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
 0.893
Caka_1492
PFAM: NUDIX hydrolase; KEGG: cte:CT0729 NUDIX/MutT family protein.
 
     0.805
Caka_1493
PFAM: adenylate cyclase; KEGG: neu:NE1496 hypothetical protein.
       0.776
Caka_1496
KEGG: ssp:SSPP123 hypothetical protein.
       0.773
Caka_1497
KEGG: ote:Oter_3800 hypothetical protein.
       0.488
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.