STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1526KEGG: mei:Msip34_1793 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Caka_1525
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rbi:RB2501_09720 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.757
Caka_1524
PFAM: protein of unknown function DUF1365; KEGG: dol:Dole_0349 cyclopropane-fatty-acyl- phospholipid synthase.
       0.582
Caka_1522
Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: abo:ABO_0828 hypothetical protein; PFAM: Methyltransferase type 11.
       0.537
Caka_1523
PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_48630 predicted NAD/FAD-binding protein.
       0.537
Caka_1527
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: scl:sce6195 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.522
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.