STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1565PFAM: protein of unknown function DUF1294; KEGG: ote:Oter_1076 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Caka_1563
KEGG: ote:Oter_3487 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.
       0.773
Caka_1564
KEGG: ote:Oter_3488 DnaJ-like protein.
       0.773
Caka_1562
SMART: helicase c2; KEGG: ote:Oter_3486 helicase C2.
       0.718
Caka_1560
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1587; Protein of unknown function DUF1595; Protein of unknown function DUF1588; protein of unknown function DUF1585; KEGG: rba:RB7033 filamin.
       0.429
Caka_1561
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
       0.429
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.