STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1699PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: mlo:mll5470 hypothetical protein. (477 aa)    
Predicted Functional Partners:
Caka_1692
KEGG: cps:CPS_2993 hypothetical protein.
 
     0.853
Caka_1696
KEGG: bxe:Bxe_A2137 putative transmembrane protein.
 
     0.836
Caka_1693
KEGG: swp:swp_2405 TPR repeat protein.
 
     0.820
Caka_1694
PFAM: Ssl1 domain protein; KEGG: shm:Shewmr7_0568 von Willebrand factor, type A.
 
     0.797
Caka_1697
PFAM: protein of unknown function DUF58; KEGG: cps:CPS_2989 hypothetical protein.
 
     0.794
Caka_1700
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vfm:VFMJ11_2484 hypothetical protein.
 
    
0.784
Caka_1695
KEGG: cps:CPS_2991 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
       0.762
Caka_1698
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cps:CPS_2988 hypothetical protein.
       0.762
Caka_2688
KEGG: sun:SUN_2454 hypothetical protein.
 
     0.755
Caka_2618
KEGG: rle:pRL110217 hypothetical protein.
 
     0.752
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.