STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1733TIGRFAM: glycerate kinase; KEGG: ote:Oter_1787 glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family. (391 aa)    
Predicted Functional Partners:
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate- independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.908
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.896
Caka_1734
PFAM: Protein of unknown function DUF2062; KEGG: pcr:Pcryo_0790 hypothetical protein.
       0.773
Caka_1735
PFAM: conserved hypothetical protein; KEGG: ote:Oter_1786 hypothetical protein.
       0.524
Caka_1732
TIGRFAM: ribonuclease, Rne/Rng family; KEGG: ote:Oter_0293 ribonuclease; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.
       0.512
pyrC
Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
    0.431
Caka_2635
KEGG: vfm:VFMJ11_1011 hypothetical protein.
   
    0.414
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.