STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_1990KEGG: amu:Amuc_2087 hypothetical protein. (281 aa)    
Predicted Functional Partners:
Caka_1991
KEGG: pvi:Cvib_0629 hypothetical protein.
       0.773
Caka_1989
KEGG: ajs:Ajs_3024 hypothetical protein.
       0.745
Caka_1992
KEGG: pzu:PHZ_c0492 hypothetical protein.
       0.709
Caka_1993
Hypothetical protein; KEGG: bfs:BF1900 putative LPS biosynthesis related flippase.
       0.694
Caka_1986
Acetyltransferase; KEGG: bvu:BVU_2656 acetyltransferase.
       0.689
Caka_1987
KEGG: pph:Ppha_0561 putative acetyltransferase.
       0.689
Caka_1988
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_2149 glycosyl transferase group 1.
       0.689
Caka_1994
Transacetylase; KEGG: avi:Avi_7339 transacetylase.
       0.654
Caka_1985
KEGG: eel:EUBELI_00247 hypothetical protein.
       0.628
Caka_1983
PFAM: glycosyl transferase group 1; KEGG: bbe:BBR47_42500 putative polysaccharide biosynthesis protein.
       0.595
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.