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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2000KEGG: amc:MADE_01529 putative orphan protein. (617 aa)    
Predicted Functional Partners:
Caka_0647
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: amc:MADE_01786 putative TonB dependent receptor.
 
  
 0.796
Caka_0907
Chromosome segregation ATPase-like protein; KEGG: ote:Oter_0095 hypothetical protein.
  
     0.645
Caka_2003
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cps:CPS_2636 hypothetical protein.
 
     0.616
Caka_0250
PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ote:Oter_0279 exonuclease RNase T and DNA polymerase III.
  
     0.596
Caka_2309
KEGG: ote:Oter_1404 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
  
     0.504
Caka_1097
KEGG: ote:Oter_2563 hypothetical protein.
  
     0.492
Caka_0933
PFAM: Organic solvent tolerance protein; KEGG: ote:Oter_3845 organic solvent tolerance protein.
  
     0.489
Caka_1999
KEGG: hypothetical protein; K05284 phosphatidylinositol glycan, class M.
       0.480
Caka_2045
Hypothetical protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region.
  
     0.472
Caka_2033
KEGG: cps:CPS_1818 hypothetical protein.
  
     0.471
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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