STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2053KEGG: ote:Oter_1667 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase. (883 aa)    
Predicted Functional Partners:
Caka_2467
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ote:Oter_2844 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
  
   
 0.771
Caka_2654
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ote:Oter_3535 cobyrinic acid ac-diamide synthase.
  
  
 0.588
Caka_2054
KEGG: ote:Oter_1668 mannose-6-phosphate isomerase type I; PFAM: mannose-6-phosphate isomerase type I.
       0.569
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
 
  
 0.558
Caka_2052
PFAM: protein of unknown function DUF1568; KEGG: tgr:Tgr7_2780 hypothetical protein.
       0.528
Caka_3065
KEGG: ote:Oter_2628 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 0.527
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
   
 0.495
Caka_2452
KEGG: ote:Oter_1704 ATPase central domain- containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
    0.495
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
  
 0.478
Caka_3075
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.428
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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