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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2139Hypothetical protein; KEGG: son:SO_0189 fibronectin type III domain- containing protein. (1160 aa)    
Predicted Functional Partners:
Caka_0968
KEGG: pdi:BDI_0623 surface layer protein.
  
 
 0.782
Caka_3039
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: amu:Amuc_1291 putative surface layer protein, with cytochrome c domain.
  
 
 0.782
Caka_2138
KEGG: mpt:Mpe_A2206 hypothetical protein.
       0.520
Caka_2140
KEGG: hypothetical protein.
       0.505
Caka_2141
Putative CheA signal transduction histidine kinase; KEGG: ttu:TERTU_3728 hypothetical protein.
       0.406
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.