STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2184KEGG: mca:MCA2172 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (218 aa)    
Predicted Functional Partners:
Caka_2941
PFAM: protein of unknown function DUF214; KEGG: sus:Acid_6484 hypothetical protein.
 
 0.955
Caka_2183
PFAM: protein of unknown function DUF214; KEGG: mca:MCA2173 hypothetical protein.
 
   0.912
Caka_2182
PFAM: periplasmic solute binding protein; KEGG: mca:MCA2174 adhesion lipoprotein.
  
  
 0.779
Caka_2186
KEGG: eli:ELI_11060 hypothetical protein.
   
   0.758
Caka_2185
KEGG: jan:Jann_3106 hypothetical protein.
       0.745
Caka_0340
PFAM: NMT1/THI5 like domain protein; KEGG: rba:RB370 nitrate transport ATP-binding protein.
 
      0.720
Caka_1205
ABC transporter related protein; KEGG: min:Minf_2136 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.710
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.647
cysS
TIGRFAM: cysteinyl-tRNA synthetase; KEGG: amu:Amuc_1031 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.627
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
     0.582
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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