STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2215PFAM: protein of unknown function DUF1573; KEGG: amu:Amuc_0191 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Caka_2217
KEGG: bpy:Bphyt_0535 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
 
     0.850
Caka_2216
PFAM: DoxX family protein; KEGG: dat:HRM2_27120 MauE.
       0.786
Caka_2218
PFAM: protein of unknown function DUF481; KEGG: eli:ELI_03545 putative salt-induced outer membrane protein.
       0.547
Caka_0933
PFAM: Organic solvent tolerance protein; KEGG: ote:Oter_3845 organic solvent tolerance protein.
  
     0.523
Caka_1296
Amidophosphoribosyltransferase; KEGG: ote:Oter_3710 glutamine amidotransferase class-II; PFAM: hydrogenase large subunit domain protein; glutamine amidotransferase class-II.
  
     0.479
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.