STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2219PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: hau:Haur_1177 glycoside hydrolase family protein. (473 aa)    
Predicted Functional Partners:
Caka_2220
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2977 short-chain dehydrogenase/reductase SDR.
   
   0.533
Caka_0480
KEGG: aau:AAur_0604 hypothetical protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
 
  
 0.517
Caka_0506
KEGG: bgl:bglu_2g05460 hypothetical protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
 
  
 0.460
Caka_0537
KEGG: phe:Phep_2693 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
 
  
 0.424
Caka_0670
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sth:STH292 hypothetical protein.
 
     0.416
Caka_0536
KEGG: bvu:BVU_4052 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
 
  
 0.414
Caka_0789
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: pat:Patl_0823 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).
 
  
 0.403
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.