STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2260KEGG: rmr:Rmar_2561 hypothetical protein. (497 aa)    
Predicted Functional Partners:
Caka_2259
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cts:Ctha_1737 TonB-dependent receptor.
 
     0.892
Caka_2029
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0823 TonB-dependent receptor.
  
   
 0.700
Caka_2261
PFAM: protein of unknown function DUF1555; KEGG: ote:Oter_1722 beta strand repeat-containing protein.
       0.661
Caka_1373
KEGG: hba:Hbal_2775 hypothetical protein.
  
    0.651
Caka_2237
TIGRFAM: TonB family protein; KEGG: sde:Sde_2818 hypothetical protein.
 
     0.614
Caka_2267
TIGRFAM: TonB family protein; KEGG: sml:Smlt0009 putative proline-rich TonB dependent receptor protein.
 
     0.549
Caka_2948
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: ote:Oter_3602 TPR repeat-containing protein.
  
 
 0.537
Caka_2971
Hypothetical protein; KEGG: sat:SYN_01464 TPR repeat-containing protein.
  
 
 0.537
Caka_1650
Efflux transporter, RND family, MFP subunit; KEGG: dat:HRM2_00910 putative H+-transporting two- sector ATPase, beta subunit (ArcA-family protein); TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.496
Caka_2262
Hypothetical protein; KEGG: son:SO_1016 NADH dehydrogenase subunit G.
       0.475
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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