STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2268PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2155 biopolymer transport protein ExbD/TolR. (132 aa)    
Predicted Functional Partners:
Caka_2269
PFAM: MotA/TolQ/ExbB proton channel; KEGG: psb:Psyr_1633 MotA/TolQ/ExbB proton channel.
 
   0.929
Caka_2270
PFAM: MotA/TolQ/ExbB proton channel; KEGG: sde:Sde_2815 biopolymer transport proteins- like.
 
   0.923
Caka_2267
TIGRFAM: TonB family protein; KEGG: sml:Smlt0009 putative proline-rich TonB dependent receptor protein.
 
   0.902
Caka_1361
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_3906 MotA/TolQ/ExbB proton channel.
  
   0.826
Caka_2443
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_0242 MotA/TolQ/ExbB proton channel.
  
   0.816
Caka_2969
PFAM: MotA/TolQ/ExbB proton channel; KEGG: lbf:LBF_0146 transport protein, TolQ-like protein.
  
   0.807
Caka_0276
PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel.
  
   0.805
Caka_0487
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pmx:PERMA_1968 MotA/TolQ/ExbB proton channel family protein.
  
   0.792
Caka_2266
KEGG: swp:swp_4947 TPR repeat protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
 
     0.764
Caka_2237
TIGRFAM: TonB family protein; KEGG: sde:Sde_2818 hypothetical protein.
 
   0.702
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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