STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2278KEGG: ote:Oter_0641 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Caka_2277
KEGG: ote:Oter_0642 hypothetical protein.
       0.774
Caka_2276
KEGG: ote:Oter_0643 hypothetical protein.
       0.773
Caka_2279
Hypothetical protein; KEGG: cbh:CLC_0854 flagellin.
       0.773
Caka_2280
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ote:Oter_0639 type II and III secretion system protein.
       0.558
Caka_2275
Hypothetical protein; KEGG: similar to Proline-rich transmembrane protein 1.
       0.448
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.