STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2290KEGG: ote:Oter_2116 PilT domain-containing protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc. (337 aa)    
Predicted Functional Partners:
Caka_2289
KEGG: avn:Avin_40050 quinoprotein glucose dehydrogenase.
       0.757
Caka_2288
Hypothetical protein; KEGG: mar:MAE_42710 serine/threonine kinase.
       0.553
Caka_1064
PFAM: UvrB/UvrC protein; KEGG: ote:Oter_2676 UvrB/UvrC protein.
 
    0.450
Caka_0435
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ote:Oter_2440 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase.
  
    0.449
Caka_1063
PFAM: ATP:guanido phosphotransferase; KEGG: ote:Oter_2677 ATP:guanido phosphotransferase.
 
    0.439
Caka_2291
KEGG: ote:Oter_1762 type IV pilus biogenesis protein.
       0.408
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.