STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2319PFAM: ABC-type uncharacterised transport system; KEGG: ote:Oter_0089 hypothetical protein. (493 aa)    
Predicted Functional Partners:
Caka_2320
PFAM: ABC-2 type transporter; KEGG: ote:Oter_0088 hypothetical protein.
     0.964
Caka_2321
KEGG: ote:Oter_0087 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.946
Caka_2318
KEGG: ote:Oter_0090 hypothetical protein.
 
     0.945
Caka_2317
KEGG: ote:Oter_0091 hypothetical protein.
       0.755
Caka_0467
KEGG: pla:Plav_1397 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.743
Caka_0631
KEGG: pmy:Pmen_3073 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.741
Caka_0630
PFAM: ABC-2 type transporter; KEGG: pau:PA14_16880 putative permease of ABC transporter.
 
  
 0.676
Caka_0933
PFAM: Organic solvent tolerance protein; KEGG: ote:Oter_3845 organic solvent tolerance protein.
  
     0.488
Caka_2322
PFAM: 3'-5' exonuclease; HRDC domain protein; KEGG: apv:Apar_0639 ribonuclease D; SMART: 3'-5' exonuclease; HRDC domain protein.
       0.475
Caka_0468
PFAM: ABC-type uncharacterised transport system; KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
 
  
 0.450
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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